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MarcElosua / SPOTlight

Spatial Transcriptomics Capture Location Deconvolution
https://marcelosua.github.io/SPOTlight
GNU General Public License v3.0
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Fixed Matrix version incompatible with SeuratObject #108

Closed lardenoije closed 1 year ago

lardenoije commented 1 year ago

There was probably a good reason to fix the Matrix package version to 1.6-1.1, however this version appears to be incompatible with the SeuratObject package (version 5.0.1), which requires it to be >= 1.6.3. If I install SPOTlight without that commit (https://github.com/MarcElosua/SPOTlight/tree/0c8a2879fbe1422a1ef5973c20939249ce8f54ca) it appears to work with SeuratObjects without issues.

MarcElosua commented 1 year ago

hi @lardenoije Thank you for the heads up!

I was trying to figure out how to fix the discrepancy between Seurat and the Matrix package! Everything should be solved in the devel branch and pushed to Bioconductor.

This should work now:

install_github("https://github.com/MarcElosua/SPOTlight@devel")