Closed ok-gitr closed 3 years ago
Hi @kolabx
I believe this error might be due to the tibble
version you are running.
I am looking into it and will get back to you as soon as I have a fix!
thanks for reporting this,
Marc
Hi @kolabx The bug should now be fixed!
Hi @MarcElosua,
I'm still getting this error message using SPOTlight 0.1.3:
<error/tibble_error_already_has_rownames>
.data
must be a data frame without row names.
Backtrace:
█
%>%
(...)sessionInfo() R version 4.0.2 (2020-06-22) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Mojave 10.14.6
Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
Random number generation: RNG: Mersenne-Twister Normal: Inversion Sample: Rounding
locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages: [1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] edgeR_3.30.3 limma_3.44.3 Matrix_1.2-18 NMF_0.23.0
[5] Biobase_2.48.0 BiocGenerics_0.34.0 cluster_2.1.0 rngtools_1.5
[9] pkgmaker_0.31.1 registry_0.5-1 patchwork_1.1.1 cowplot_1.1.1
[13] SeuratData_0.2.1 forcats_0.5.0 stringr_1.4.0 purrr_0.3.4
[17] readr_1.3.1 tidyr_1.1.2 tibble_3.0.5 ggplot2_3.3.3
[21] tidyverse_1.3.0.9000 SPOTlight_0.1.3 dplyr_1.0.3 Seurat_3.2.3
Hi @alissacg ,
Can you please try installing SPOTlight from the devel branch:
devtools::install_github("https://github.com/MarcElosua/SPOTlight", ref = "devel")
The issue should be adressed and functional there!
Thanks for reporting the issue,
Marc
This bug should be fixed in the latest version
Hi Marc,
I am getting an error when running
spotlight_deconvolution()
with your example dataset. More info:Any insight as to why?
Thanks