Issue plotSpatialScatterpie with a SpatialExperiment object

[Zifeng-L]

Hi there, I just want to plot a scatterpie with the axis from the mirror img.

plotSpatialScatterpie(
        x = spe,
        y = mat,
        cell_types = colnames(mat),
        img = TRUE,
        slice = SpatialExperiment::imgData(spe)[1, "sample_id"],
        scatterpie_alpha = 1,
        pie_scale = 0.4,
        axis = "h"
    )

I keep getting this error:

any help? Many thanks in advance.

[MarcElosua]

Hi @Zifeng-L,

For me it works well when I pass a a SpatialExperiment object. Can you please return what class spe is? You can also try passing the image object directly to the parameter img = SpatialExperiment::imgRaster(spe, sample_id = slice)

Hope this helps!

[criphg]

Same problem here. class(spe) = "SpatialExperiment", when use imgRaster(spe) in place of True only show part of image, and lost of pie chart information. The image looks good in plot(imgRaster(spe)).

Any help would be appreciated.

[MarcElosua]

Hi @criphg could you please share a reprex so I can look into this? Have you tried passing the image object directly to the img parameter - img = SpatialExperiment::imgRaster(spe, sample_id = slice) Thank you!