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MarcElosua / SPOTlight

Spatial Transcriptomics Capture Location Deconvolution
https://marcelosua.github.io/SPOTlight
GNU General Public License v3.0
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In README.md the processed object can not find #98

Closed Han117 closed 10 months ago

Han117 commented 1 year ago

In README.md

For the purpose of this tutorial we are going to use adult mouse brain data. The scRNAseq data can be downloaded here, while the spatial data is the one put out publicly by 10X and the processed object can be downloaded here.

"the processed object can be downloaded [here]" can not find。

MarcElosua commented 1 year ago

Hi @Han117

Please find the downsampled mouse brain data used for the vignette here

Han117 commented 1 year ago

Hi,@MarcElosua Thank you very much for your answer. I found the processed object .

I want to ask about the dataset PBMC (GSE133549), which I downloaded from the GEO website, but these data sets have not been processed, there are no data types in these data sets, and the data sets are not in.rDS format.

I saw that you used GSE133549 in your method, could you please provide the processed GSE133549 data set? Thank you very much.