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MarcElosua / SPOTlight_deconvolution_analysis

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About PDAC data #6

Closed cquzys closed 1 year ago

cquzys commented 2 years ago

Hello @MarcElosua ,

Thanks for sharing these files. I cannot find the coordinates of each spot in the image of PDAC data. I just saw the relative spatial positions of all spots, but I would like to map these spots to the tissue images. Thus, I need the spot's coordinates in the tissue image. Could you please help me with this? Thanks a lot!

MarcElosua commented 2 years ago

Hi @cquzys,

Apologies for the very delayed response. Can you remind me of which files I shared with you? You can download the processed ST and SC data from this link. Let me know if this works.

Marc

Han117 commented 1 year ago

Hi,@MarcElosua, It's a good study about your method. You could provid the data about processed Mus Musculus Brain ST.rds and SC.rds ?

MarcElosua commented 1 year ago

Hi @Han117,

the ST data can be downloaded from 10X genomics public datasets website - https://www.10xgenomics.com/resources/datasets

The single cell data can be downloaded from the Allen brain institute here - https://portal.brain-map.org/atlases-and-data/rnaseq/mouse-whole-cortex-and-hippocampus-10x

Hope this helps! Marc