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MarcoDiSalvo90 / RhoTermPredict

GNU Affero General Public License v3.0
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rhotermpredict #5

Closed samoudj closed 4 years ago

samoudj commented 4 years ago

Hello, I am trying to apply rhotermpredict on 16000 complete genomes. Can you tell me what is the command line that alllows me to execute rhotermpredict in one line like rhotermpredict_algorithm.py -i input.fasta -o output.csv ...?? please it is really important, i would appreciate if you can help me :)

MarcoDiSalvo90 commented 4 years ago

Hi,

You only have to write in the command line "python RhoTermPredict_algorithm.py" from the directory in which the code is saved. Then the program will ask you the path of the file in which you saved your genomes, that you will have to write.

MarcoDiSalvo90 commented 4 years ago

anyway, in the next future, I could modify the code in order to pass the genome file in the command line

samoudj commented 4 years ago

Hello, thank you for you response. I modifed today. Just need to remplace $file=input() by $file =arg[1]. Thank you anyway. Wish you a nice continuation

Le mer. 29 juill. 2020 3 h 58 a.m., Marco Di Salvo notifications@github.com a écrit :

anyway, in the next future, I could modify the code in order to pass the genome file in the command line

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