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MareesAT / GWA_tutorial

A comprehensive tutorial about GWAS and PRS
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Can you explain more about the "inversion.txt" in the 1_QC_GWAS folder #4

Open ulysses1881826 opened 4 years ago

ulysses1881826 commented 4 years ago

Thank you for your tutorial in advance. I have some confusion about the "inversion.txt" in the 1_QC_GWAS folder. I know it is for excluding high inversion regions. However, where is the "inversion.txt" come from? Since there are many other regions of high linkage disequilibrium, why you just choose these regions? Can you give some more detailed explanation here? Thank you~

KarthickRajaNarayanan commented 4 years ago

I have the same doubt. Did you get the answer?

Thanks.

maldonado2990 commented 3 years ago

following

Xiao-lin-Liu commented 3 years ago

following

FedericoBottoni commented 3 years ago

following as well

Clemence50421 commented 2 years ago

following as well

NgocNam1512 commented 2 years ago

following

usernicai commented 1 year ago

following

PollyRosy commented 1 month ago

following as well. I am not sure if I should generate one according to my dataset? Or I can just use a fake file and do not exclude anything