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MariaNattestad / Assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
http://assemblytics.com
MIT License
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input assembly stats from assemblytics #13

Closed chunlinxiao closed 5 years ago

chunlinxiao commented 5 years ago

Just wondering - In the assembly stats output file, for the "Query", are the "Number of sequences" and "Total sequence length" representing the stats from the input assembly with length filtering, or from unfiltered original assembly?

MariaNattestad commented 5 years ago

Thanks for the question. Those assembly statistics are based on the whole input delta file, before any unique anchor filtering that Assemblytics applies.