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MariaNattestad / Assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
http://assemblytics.com
MIT License
136 stars 28 forks source link

Assemblytics for bacterial genome #39

Closed rthapa1 closed 7 months ago

rthapa1 commented 3 years ago

Can Assemblytics be used to call structural variants from de novo assembly of bacterial genomes?

MariaNattestad commented 3 years ago

Yes. One of the examples is E. coli. I’d experiment with lower parameters when the genome is tiny, for alignment and for Assemblytics, just a matter of trying things to see what makes sense though.

On Tue, Feb 16, 2021 at 8:50 AM rthapa1 notifications@github.com wrote:

Can Assemblytics be used to call structural variants from de novo assembly of bacterial genomes?

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