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MarioniLab / DropletUtils

Clone of the Bioconductor repository for the DropletUtils package.
https://bioconductor.org/packages/devel/bioc/html/DropletUtils.html
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How to get the cell naems of those get filtered (considered as empty droplets) #102

Closed grimwoo closed 12 months ago

grimwoo commented 1 year ago

Hi, I am using the seurat to process the data. And I wonder how to get the cell naems of those get filtered (considered as empty droplets), so that I could remove empty droplets in my seurat object (by subset(object = seurat.object, subset = CellNames %in% ???))

jonathangriffiths commented 1 year ago

Hi there,

Did you download the raw or processed data when you called the function?

If the default argument or type=processed, then you already have filtered cells.

Jonny.