The code cannot run - Githubissues

MarioniLab / FurtherMNN2018

Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.

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The code cannot run #12

Closed yzcv closed 3 years ago

yzcv commented 4 years ago

Hi,

I am a novice in bioinformatics field. And I am very attracted by your MNN work. But I fell very confused as I can not run your code normalizePancreas.R in MNN2017-master/Pancreas. After all the required packages installed, the error is as follows,

Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘isSpike<-’ for signature ‘"SingleCellExperiment", "missing"’

Could you please provide a hint to fix this issue? Thanks a bunch.

LTLA commented 4 years ago

That code is long dead. Try https://osca.bioconductor.org/merged-pancreas.html instead.