The mkdir command is missing for the download_data.sh in haematopoiesis folder

MarioniLab / FurtherMNN2018

Code for further development of the mutual nearest neighbours batch correction method, as implemented in the batchelor package.

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The mkdir command is missing for the download_data.sh in haematopoiesis folder #2

Closed mt1022 closed 6 years ago

mt1022 commented 6 years ago

What about add a line like this?

if [ ! -d "raw_data" ]; then mkdir raw_data; fi

LTLA commented 6 years ago

I was actually going to transition all of these to use the excellent BiocFileCache facility from Bioconductor. You can make a PR if you like, but I'm going to delete these files anyway eventually.

mt1022 commented 6 years ago

It is quite obvious for readers. Let's leave it as is and wait for the BiocFileCache version.

LTLA commented 6 years ago

The transition to BiocFileCache is mostly complete - I am still waiting for our institute to fix some security certificates related to the processed data files for the pancreas dataset, so pancreas/prepareData.R won't work properly right now. Everything else should be functional, so I'll close this.