search

MarioniLab / MNN2017

Code for the MNN manuscript figures
51 stars 19 forks source link

the data is incomplete #10

Closed wkkion closed 5 years ago

wkkion commented 5 years ago

when I test your code--pancreas_subsample_DE.R, I cannot find some data, such as "../Pancreas/Data/GSE81076_SFnorm.tsv" "../Pancreas/Data/GSE85241_SFnorm.tsv" and so on.

LTLA commented 5 years ago

Well, that's because you have to run the preceding scripts, e.g., normalizePancreas.R. Did you follow the instructions in the top-level README?

In any case, further updates to the scripts (including updates to match with new versions of scran) will be performed at https://github.com/MarioniLab/FurtherMNN2018.