Where does MAP.csv in Haematopoeisis come from?

MarioniLab / MNN2017

Code for the MNN manuscript figures

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Where does MAP.csv in Haematopoeisis come from? #5

Closed LTLA closed 6 years ago

LTLA commented 6 years ago

We should provide instructions on how to obtain this, if it is publicly available somewhere. If we got it by personal communication, then this should be mentioned in the comments.

podorskaja commented 6 years ago

I wasn't able to find the instructions on how to obtain the MAP.csv file. Could you please tell me where I can find them?

LTLA commented 6 years ago

It's in the Haematopoiesis folder.

podorskaja commented 6 years ago

Thank you for the quick response! I understand that the actual MAP.csv is in the Haematopoiesis folder and is based on the paper by Paul et al. What I am wondering is how exactly did you get the data inside this file?

LTLA commented 6 years ago

I believe it was obtained from the authors directly. @LalehHaghverdi?

LalehHaghverdi commented 6 years ago

True, how to get the cell type labels (FACs index sorting) is described in Fig. 1 of Paul et al. (2015) paper. We asked the authors for the cell type labels.