Closed Budjavac closed 8 months ago
HI, apologies for the late reply. Truth is - this is a very weird bug, to which I have no intuition of what might cause the problem.
If it is still relevant - could you perhaps share a toy example which I can test on my machine?
Assuming its not relevant anymore and closing the issue - please reopen if needed
I have noticed the following bug: For one of my sce objects, running stat_k = estimate_neighbourhood_sizes(my_data.sce, k_grid = seq(10,40,5), order = 2, prop = 0.1 , filtering = TRUE, reducedDim_name = "PCA" , plot_stat = TRUE)
causes my R to freeze after estimating the value for k=10. The output is
after which my RStudio freezes. If k_grid = seq(10,40,10) is passed instead, the function successfully runs for k=10, k=20, k=30, and k=40, and tells me the number of sets for each k value.
Running
does work, so the only function that seems to have an issue with k=15 for this object is estimate_neighbourhood_sizes().
Any ideas on what could be causing this bug?