The testNhoods documentation and contrasts vignette require clarification on the ordering of formula variables. The default behaviour of testNhoods is to use the last fixed effect variable in the model for hypothesis testing. This contrasts with the model.matrix behaviour which needs the contrast variable to be the first.
Either change the code to make the contrasts consistent with the testNhoods behaviour or document it clearly.
The
testNhoodsdocumentation and contrasts vignette require clarification on the ordering of formula variables. The default behaviour oftestNhoodsis to use the last fixed effect variable in the model for hypothesis testing. This contrasts with themodel.matrixbehaviour which needs the contrast variable to be the first.Either change the code to make the contrasts consistent with the
testNhoodsbehaviour or document it clearly.