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MarioniLab / miloR

R package implementation of Milo for testing for differential abundance in KNN graphs
https://bioconductor.org/packages/release/bioc/html/miloR.html
GNU General Public License v3.0
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I have included the grouping information, but I can't determine their roles. #354

Open M-jk22 opened 1 week ago

M-jk22 commented 1 week ago

Hello, sorry to bother you. When using Milo, I want to know how to determine which group is the treatment group and which one is the control group. I have included the grouping information, but I can't determine their roles.

MikeDMorgan commented 1 week ago

The default behaviour in R is lexicographical ordering. You can set this yourself by defining your variable as a factor and therefore the levels.