Closed emdann closed 2 years ago
Here we don't have enough replicates to do the differential analysis and use the rest as reference. Use the integrated PBMC datasets instead.
Or use full lung cell atlas https://cellxgene.cziscience.com/collections/6f6d381a-7701-4781-935c-db10d30de293
Answer: no
Lung dataset location:
/home/jupyter/mount/gdrive/query2reference/processed_data/lung.h5ad
With celltypist/celltypes
With scArches/nhoods