Closed emdann closed 1 year ago
This dataset works for no. 1, but not really for no.2: low effect size and only 2 replicates per KO condition Analysis in https://github.com/emdann/diff2atlas/blob/master/notebooks/mouse_chimeras/mouse_chimeras_design_comparison.ipynb
Possible Solutions:
Address no 2 with Augur implementation combined with DA fold-change
Which data
What are expected perturbations here?
How
Evaluate outcomes
Blood progenitors
orErythroid
(where positive == logFC < 0 and SpatialFDR < 0.1). Consider FP all the other predicted depletions.