Wrapper for model train and fit - Githubissues

MarioniLab / oor_design_reproducibility

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Wrapper for model train and fit #7

Closed emdann closed 2 years ago

emdann commented 2 years ago

Which models

scVI
CellTypist
KNN_classifier (used for scArches uncertainty)

Training

Input

train_adata: AnnData object of training cells
outfile: path to file to save Output:
model

Fitting

Input

model
query_adata
outfile

Output:

prediction model