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MarioniLab / scran

Clone of the Bioconductor repository for the scran package.
https://bioconductor.org/packages/devel/bioc/html/scran.html
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Old versions disappeared from bioconductor? #104

Closed scottgigante-immunai closed 1 year ago

scottgigante-immunai commented 1 year ago

I am getting 403 errors when I try to install an old version of scran. Similar issues for batchelor and scuttle. Are you removing archived packages from bioc when you update a new version?

To reproduce:

> renv::install("bioc::batchelor@1.12.3")
Warning: failed to find source for 'batchelor 1.12.3' in package repositories
Error: failed to retrieve package 'batchelor@1.12.3'
In addition: Warning message:
curl: (22) The requested URL returned error: 403 Forbidden 
Traceback (most recent calls last):
 8: renv::install("bioc::batchelor@1.12.3")
 7: retrieve(names(remotes))
 6: handler(package, renv_retrieve_impl(package))
 5: renv_retrieve_impl(package)
 4: renv_retrieve_bioconductor(record)
 3: renv_retrieve_repos(record)
 2: stopf("failed to retrieve package '%s'", renv_record_format_remote(record))
 1: stop(sprintf(fmt, ...), call. = call.)
Execution halted
LTLA commented 1 year ago

I don't do anything w.r.t. archive management.

scottgigante-immunai commented 1 year ago

Appears to be related to commits made by @jwokaty:

commit df66576d6958a088c38bd45e1cad9c16cbb52991 (origin/RELEASE_3_16)
Author: J Wokaty <jennifer.wokaty@sph.cuny.edu>
Date:   Tue Nov 1 11:13:29 2022 -0400

    bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

Equivalent commits dabf6b95e478d599557ebbed03edd44031fd6b78 and a5912c32d1cb3d09899e4b587dc73200a3c7201d in scuttle and batchelor.

scottgigante-immunai commented 1 year ago

Figured it out -- my build environment updated to bioc 3.16 without me realising.