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MarioniLab / scran

Clone of the Bioconductor repository for the scran package.
https://bioconductor.org/packages/devel/bioc/html/scran.html
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object ‘normalizeCounts’ is not exported by 'namespace:scater' #27

Closed DadongZ closed 5 years ago

DadongZ commented 5 years ago

Hi I got the below error message when load scran package:

No methods found in package ‘DelayedArray’ for request: ‘write_block_to_sink’ when loading ‘DelayedMatrixStats’
Error: package or namespace load failed for ‘scran’:
 object ‘normalizeCounts’ is not exported by 'namespace:scater'

Any suggestions?

LTLA commented 5 years ago

Make sure you're BiocManager::valid(). I suspect you're mixing packages from different versions of Bioconductor. For me, this works fine:

library(scater)
example(normalizeCounts)

... which indicates that, in fact, normalizeCountsis being exported by scater.

LTLA commented 5 years ago

I'm going to assume that this problem was solved, unless told otherwise.