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MarioniLab / scran

Clone of the Bioconductor repository for the scran package.
https://bioconductor.org/packages/devel/bioc/html/scran.html
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findMarkers test.type functionality broke #50

Closed ONeillMB1 closed 4 years ago

ONeillMB1 commented 4 years ago

I think the test.type functionality of findMarkers() has broke.

When I try running my former code after updating the package I now get the following error message: Error in .local(x, ...) : unused argument (test.type = "wilcox")

LTLA commented 4 years ago

Huh. Are you sure you're using the latest release version? It should be 1.14.5.

ONeillMB1 commented 4 years ago

Ah, yes, it appears I am loading an older version. Apologies. The break must have come from running it on my desktop (R 3.5) rather than our server (R 3.6).

Bioconductor version 3.8 (BiocManager 1.30.4), R 3.5.0 (2018-04-23) Installing package(s) 'scran' trying URL 'https://bioconductor.org/packages/3.8/bioc/bin/macosx/el-capitan/contrib/3.5/scran_1.10.2.tgz' Content type 'application/x-gzip' length 3556544 bytes (3.4 MB)

downloaded 3.4 MB