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Marsilea-viz / marsilea

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)
https://marsilea.rtfd.io/
MIT License
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How to load datasets? #44

Closed pxxiao-hz closed 1 month ago

pxxiao-hz commented 1 month ago

for example: 

seq = ma.load_data("seq_align")
seq = seq.iloc[:, 130:175]

How can we visualize our own data? What is the corresponding syntax?

Best wishes.

pxxiao-hz commented 1 month ago

If the length is 200, how can we visualize with 50 characters per row?

Mr-Milk commented 1 month ago

Thanks for using Marsilea.

  1. lode_data is for loading example datasets from web. It's not for user to load their own data. For different plotter, there are different input, mostly are either numpy.ndarray or pandas.DaraFrame or arbitrary array-like container. Please refer to the documentation for details.

  2. I assume you want to draw the sequence logo. You can draw each 50 characters separately and then concatenate them. https://marsilea.readthedocs.io/en/stable/tutorial/concatenation.html

pxxiao-hz commented 1 month ago

The issue has been resolved. Thanks for your reply.