Generation of adjacency matrix for other tumor types

MartinFXP / DawnRank

driver gene identification algorithm DawnRank 2014

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Generation of adjacency matrix for other tumor types #2

Open ReneeRoller opened 4 years ago

ReneeRoller commented 4 years ago

How is the 0-1 matrix of pathway information generated that is available in the example data? Can it be done for other tumor types as well?

MartinFXP commented 4 years ago

The pathway information is not necessarily dependent of tumor type. You can get pathway information from many different sources. E.g., https://www.kegg.jp/ provides a long list of manually curated pathways with some cancer specific/relevant.