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MartinKahabka
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ClIntKahabka
The fork of the ClInt Project to adjust the pipeline for only RNA seq and later analysis of the promoter regions
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Renaming pipeline
#68
MartinKahabka
closed
2 weeks ago
0
Refactoring of pipeline
#67
MartinKahabka
closed
2 weeks ago
0
rename files of pipeline
#66
MartinKahabka
closed
2 weeks ago
0
Bug fixes in variant filter step
#65
MartinKahabka
closed
2 weeks ago
0
Error in refact_fast algorithm
#64
MartinKahabka
closed
2 weeks ago
1
README for pipeline
#63
MartinKahabka
closed
1 month ago
1
fixed bug in runVariant
#62
MartinKahabka
closed
1 month ago
0
updated pipeline to include filter
#61
MartinKahabka
closed
1 month ago
0
created regionOfInterestFilter.py
#60
MartinKahabka
closed
1 month ago
0
updated structure for finding algorithm
#59
MartinKahabka
closed
1 month ago
0
Config file
#58
MartinKahabka
opened
1 month ago
0
p-value correction with multiple analysis
#57
MartinKahabka
opened
1 month ago
0
update pipeline script
#56
MartinKahabka
closed
2 weeks ago
1
update structure to pipeline to automate finding of regions of interest
#55
MartinKahabka
closed
1 month ago
0
add to pipeline, finding of regions based on given gene names
#54
MartinKahabka
closed
1 month ago
0
Format datasets
#53
MartinKahabka
closed
1 month ago
1
add parser from data from different formats
#52
MartinKahabka
closed
1 month ago
1
Add data to pipeline
#51
MartinKahabka
closed
1 month ago
0
fix bug with condition in bash
#50
MartinKahabka
closed
1 month ago
0
add analysis of enhancer/silencer
#49
MartinKahabka
closed
1 month ago
2
add folder for necessary promoter data
#48
MartinKahabka
closed
1 month ago
1
Added sum of variants of promoter analysis
#47
MartinKahabka
closed
1 month ago
0
Add second type of analysis: sum of variants per promoter
#46
MartinKahabka
closed
1 month ago
0
Fixed bugs on variantPromoterRegions standart/fast algorithms
#45
MartinKahabka
closed
2 months ago
0
defines bash version
#44
MartinKahabka
closed
2 months ago
0
Fixedbug
#43
MartinKahabka
closed
2 months ago
0
Refactor variant promoter
#42
MartinKahabka
closed
2 months ago
0
Add faster algorithm
#41
MartinKahabka
closed
2 months ago
0
Removed rLibs and modifed statisticalAnalysis.R
#40
MartinKahabka
closed
2 months ago
0
fixed bug summaryPromoterResults.py
#39
MartinKahabka
closed
2 months ago
0
Fixed bug summaryPromoterResults.py
#38
MartinKahabka
closed
2 months ago
0
adaption to server
#37
MartinKahabka
closed
2 months ago
0
bug in statistical analysis
#36
MartinKahabka
closed
2 months ago
0
fixed bug in summaryPromoterResults.py
#35
MartinKahabka
closed
2 months ago
0
added comment to output file
#34
MartinKahabka
closed
2 months ago
0
fixed bug
#33
MartinKahabka
closed
2 months ago
0
added readr folder
#32
MartinKahabka
closed
2 months ago
0
fixed bug variantPromoterRegion.py
#31
MartinKahabka
closed
2 months ago
0
fix bug variantPromoterRegion.py
#30
MartinKahabka
closed
2 months ago
0
fixed
#29
MartinKahabka
closed
2 months ago
0
Add read me for promoterScript
#28
MartinKahabka
closed
1 month ago
0
Sh pipeline
#27
MartinKahabka
closed
2 months ago
0
Nf pipeline
#26
MartinKahabka
closed
2 months ago
0
minor changes
#25
MartinKahabka
closed
2 months ago
0
Combine to sh pipeline
#24
MartinKahabka
closed
2 months ago
0
Stastistical analysis
#23
MartinKahabka
closed
3 months ago
0
Summary of variants
#22
MartinKahabka
closed
3 months ago
0
Lab ID does not match
#21
MartinKahabka
opened
3 months ago
1
fixed bug
#20
MartinKahabka
closed
3 months ago
0
Update variantPromoterRegion.py
#19
MartinKahabka
closed
3 months ago
0
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