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MartinKahabka / ClIntKahabka

The fork of the ClInt Project to adjust the pipeline for only RNA seq and later analysis of the promoter regions
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Add file from analysis of promoter region #16

Closed MartinKahabka closed 3 weeks ago

MartinKahabka commented 3 weeks ago

The result of the runVariantProm.sh safes the lines from the Input-VCF

Now the mutations should be analysed

Desired output: For each mutation, save the patiented ID that have and do not have the given mutation. For each mutation, save the amount of mutations that correspond to "severe" and "not severe" patients

MartinKahabka commented 3 weeks ago

Save results in tsv file of format: # Information about mutation ChrVariant PosVariant NumberSeverePos NumberSevereNeg NumberNotSeverePos NumberNotSevereNeg IDSeverePos IDSevereNeg IDNotSeverePos IDNotSevereNeg

where ChrVariant/PosVariant correlates to the chromosome the variant is on/the position of the chromosome where the variant is on where Severe/NotSevere correlates with a patient that had severe/not severe symptoms. where Pos/Neg correlates to positive: variant was found/negative: variant was not found where ID correlates to the unique ID of each patient