Check if pipeline need adjustments or if there are options for only using RNA-seq

MartinKahabka / ClIntKahabka

The fork of the ClInt Project to adjust the pipeline for only RNA seq and later analysis of the promoter regions

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Check if pipeline need adjustments or if there are options for only using RNA-seq #2

Open MartinKahabka opened 5 months ago

MartinKahabka commented 5 months ago

Understand and identity the workflow of the vartable program. Which part of the program depends on DNA-data and till where does this dependency continues.

[ ] How to adjust vartable.py
[ ] How to adjust util.py, search_vcf_position_matches

MartinKahabka commented 5 months ago

get dict of variants vartable.py at 74 -> search_vcf_position_matches in utils.py

MartinKahabka commented 4 months ago

for schleife vartable.py 92-110 Aktuell: Filtert ob RNA & DNA match. Zu: Keine Filter, da nur RNA match sein kann (keine DNA angegeben).