Use nextflow to make edlib experiments reproducible.

Martinsos / edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

http://martinsos.github.io/edlib

MIT License

493 stars 162 forks source link

Closed Martinsos closed 4 years ago

Martinsos commented 6 years ago

Use nextflow to run comparison of edlib with other aligners, since that is used in the Edlib paper and it would be nice to have it reproducible.

I already did a lot of work here, on the nextflow branch.

What yet has to be done:

Maybe smt else? Add as I remember / figure out.

Martinsos commented 4 years ago

Giving up on this!