Hello, thanks for this awesome and fast tool! I am new to edlib and would like to understand alignment results better as I didn't find a good example here
To Reproduce
import edlib
query = 'AAGGATTACT' # ligation barcode
target = 'AAGGATTACNT' # read sequence - I added a 'N' at the end before 'T'
edlib.align(query, target, mode='SHW', task='path')
The above results show three end locations and I assume they are in deletion, mismatch, and insertion order. But the cigar results only show the case for insertion.
In my real-world problem, the mismatches are having more chances than indels. So is there any plan to solve this problem or did I miss any information to achieve this?
Environment (please complete the following information):
Hello, thanks for this awesome and fast tool! I am new to edlib and would like to understand alignment results better as I didn't find a good example here
To Reproduce
Results
Expected behavior
The above results show three end locations and I assume they are in deletion, mismatch, and insertion order. But the
cigarresults only show the case for insertion. In my real-world problem, the mismatches are having more chances than indels. So is there any plan to solve this problem or did I miss any information to achieve this?Environment (please complete the following information):