As test data, we used real DNA sequences ranging from 10 to 5000 kbp in length and their artificially mutated versions, in order to show how the similarity and length of aligned sequences affect performance.
But the table following that only compares performance on pairs of length 100k and 1M. I am wondering how edlib compares against seqan (and parasail) for shorter sequences (length 100 - 10k). Do you have this comparison data somewhere?
In your paper, you write:
But the table following that only compares performance on pairs of length 100k and 1M. I am wondering how edlib compares against seqan (and parasail) for shorter sequences (length 100 - 10k). Do you have this comparison data somewhere?