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Martinsos / edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
http://martinsos.github.io/edlib
MIT License
506 stars 165 forks source link

aligner: Add SAM output format #52

Open sjackman opened 8 years ago

sjackman commented 8 years ago

Consider adding SAM output format to the aligner program

Martinsos commented 8 years ago

Thank you for the suggestion! This could be a valuable addition, and I already have cigar ready, so it mostly comes to understanding SAM format. Here is a link for myself: https://samtools.github.io/hts-specs/SAMv1.pdf.

y9c commented 2 years ago

Hi @Martinsos,

Any update on this? Thanks.