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Martinsos / edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
http://martinsos.github.io/edlib
MIT License
506 stars 165 forks source link

Make aligner work on windows #56

Closed Martinsos closed 7 years ago

Martinsos commented 7 years ago

Currently aligner does not work on windows because it uses getopt to read input arguments, which is not supported on windows. We should replace it with approach that works also on windows. How to test? Well, if it should work on windows and it also works on Linux/OSX, than it is probably fine. To really test it, add test to appveyor CI build - just running aligner with some simple data will be enough.

Martinsos commented 7 years ago

Closing as there is a fresh issue with the same topic (#94).