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Martinsos / opal

SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
MIT License
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Implement finding location in target and query where best score was found #13

Closed Martinsos closed 9 years ago

Martinsos commented 9 years ago

This is first step in implementing finding of alignment (#1). I want this to affect speed of calculation as little as possible, which is the biggest challenge.

Martinsos commented 9 years ago

Finished! All works fine, it made the whole code slower for about 20%, but I will deal with that later, maybe by putting a flag to turn of the finding of last position, if that will help. Integrated with c6b7ad3c77e80b2f6b86c7359b2bdbbe9c1d04e1.