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Invalid PRECURSOR_M/Z field in RIKEN_ReSpect data set #243

Closed admceachran closed 9 months ago

admceachran commented 9 months ago

We identified two records that contain invalid precursor m/z values, attached here. It appears that a full string of m/z and intensity pairs is inserted into the MS$FOCUSED_ION: PRECURSOR_M/Z field when it should be just a single m/z value. Records are:

MSBNK-RIKEN_ReSpect-PT100763 MSBNK-RIKEN_ReSpect-PT100763.txt

MSBNK-RIKEN_ReSpect-PT102460 MSBNK-RIKEN_ReSpect-PT102460.txt

sneumann commented 9 months ago

Hi, thanks for reporting. Indeed the mangled line seems to have come in through b2ebac16fb874be2e4a366f3e829519d8286f377 and was still correct in https://github.com/MassBank/MassBank-data/blob/982cc9dbe8c1b25cbae94e48d7b05d4af52f2fea/RIKEN_ReSpect/PT100763.txt Yours, Steffen

meier-rene commented 9 months ago

Hi, thanks for reporting. These two spectra are already broken in the original data publication: http://spectra.psc.riken.jp/menta.cgi/respect/datail/datail?accession=PT100763 http://spectra.psc.riken.jp/menta.cgi/respect/datail/datail?accession=PT102460

It looks like there was a hickup in the workflow of the original data. Its impossible for me to fix that, because I dont have the original experimental data. I will deprecate this two records.

meier-rene commented 9 months ago

Thanks for pointing us to this issue. Its solved with 7ef77a9c4c7d10509ff06e275f128c897b592bef and will be in the next release.

admceachran commented 9 months ago

Thanks Rene and Steffen for the prompt reply and fix to this issue! Glad to hear it.

Best, Andrew McEachran

On Fri, Sep 22, 2023 at 1:41 AM René Meier @.***> wrote:

Closed #243 https://github.com/MassBank/MassBank-data/issues/243 as completed.

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