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MassBank / RMassBank

Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html
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Undocumented code objects #263

Open sneumann opened 3 years ago

sneumann commented 3 years ago 
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘buildRecord’ ‘findMsMsHRperMsp.direct’ ‘mergePeaks’ ‘mergeSpectra’
  ‘mergeSpectra.RmbSpectrum2List’ ‘property’ ‘property<-’
Undocumented S4 classes:
  ‘RmbSpectrum2’ ‘RmbSpectraSetList’ ‘RmbSpectraSet’ ‘RmbSpectrum2List’
Undocumented S4 methods:
  generic '+' and siglist 'RmbSpectraSet,ANY'
  generic '+' and siglist 'RmbSpectrum2List,ANY'
  generic '+' and siglist 'Spectrum,numeric'
  generic '-' and siglist 'RmbSpectraSet,ANY'
  generic '-' and siglist 'RmbSpectrum2List,ANY'
  generic '-' and siglist 'Spectrum,numeric'
  generic 'buildRecord' and siglist 'RmbSpectraSet'
  generic 'buildRecord' and siglist 'RmbSpectrum2'
  generic 'cleanElnoise' and siglist 'RmbSpectraSet,numeric,numeric'
  generic 'cleanElnoise' and siglist 'RmbSpectrum2,numeric,numeric'
  generic 'cleanElnoise' and siglist 'data.frame,numeric,numeric'
  generic 'fillback' and siglist 'RmbSpectraSet'
  generic 'fillback' and siglist 'RmbSpectrum2'
  generic 'fillback' and siglist 'msmsWorkspace'
  generic 'mergePeaks' and siglist 'RmbSpectrum2'
  generic 'mergePeaks' and siglist 'Spectrum'
  generic 'mergePeaks' and siglist 'data.frame'
  generic 'mergePeaks' and siglist 'matrix'
  generic 'mergeSpectra' and siglist 'RmbSpectrum2List'
  generic 'normalize' and siglist 'RmbSpectrum2'
  generic 'normalize' and siglist 'RmbSpectrum2List'
  generic 'property' and siglist 'RmbSpectrum2,character'
  generic 'property<-' and siglist
    'RmbSpectrum2,character,ANY,logical,character'
  generic 'property<-' and siglist
    'RmbSpectrum2,character,ANY,logical,missing'
  generic 'property<-' and siglist
    'RmbSpectrum2,character,ANY,missing,character'
  generic 'property<-' and siglist
    'RmbSpectrum2,character,ANY,missing,missing'
  generic 'selectPeaks' and siglist 'RmbSpectraSet'
  generic 'selectPeaks' and siglist 'Spectrum'
  generic 'toMassbank' and siglist 'RmbSpectraSet'
  generic 'toMassbank' and siglist 'RmbSpectrum2'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.