search

MassBank / RMassBank

Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html
Other
12 stars 15 forks source link

MSP-workflow: outdate RMB_options.ini in example #305

Open tsufz opened 2 years ago

tsufz commented 2 years ago

loadRmbSettings(system.file('msp_examples/RMB_options.ini', package="RMassBankData")) Warning messages: 1: In loadRmbSettings(system.file("msp_examples/RMB_options.ini", package = "RMassBankData")) : Your settings are outdated. Missing will be replaced by default values. 2: In updateSettings(o) : Your settings are outdated! The following fields were taken from default values: spectraList, electronicNoise

R version 4.1.2 (2021-11-01) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19044)

Matrix products: default

locale: [1] LC_COLLATE=English_United Kingdom.1252 LC_CTYPE=English_United Kingdom.1252 LC_MONETARY=English_United Kingdom.1252 [4] LC_NUMERIC=C LC_TIME=English_United Kingdom.1252
system code page: 65001

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] RMassBank_3.3.2 Rcpp_1.0.8

loaded via a namespace (and not attached): [1] lattice_0.20-45 png_0.1-7 assertthat_0.2.1 digest_0.6.29 foreach_1.5.2 utf8_1.2.2
[7] R6_2.5.1 plyr_1.8.6 mzID_1.32.0 stats4_4.1.2 httr_1.4.2 ggplot2_3.3.5
[13] pillar_1.7.0 itertools_0.1-3 zlibbioc_1.40.0 rlang_1.0.1 curl_4.3.2 S4Vectors_0.32.3
[19] preprocessCore_1.56.0 mzR_2.28.0 BiocParallel_1.28.3 ProtGenerics_1.26.0 fingerprint_3.5.7 RCurl_1.98-1.6
[25] munsell_0.5.0 compiler_4.1.2 pkgconfig_2.0.3 BiocGenerics_0.40.0 pcaMethods_1.86.0 tidyselect_1.1.2
[31] tibble_3.1.6 IRanges_2.28.0 codetools_0.2-18 XML_3.99-0.8 fansi_1.0.2 crayon_1.5.0
[37] dplyr_1.0.8 MASS_7.3-55 bitops_1.0-7 grid_4.1.2 gtable_0.3.0 lifecycle_1.0.1
[43] affy_1.72.0 DBI_1.1.2 magrittr_2.0.2 MsCoreUtils_1.6.1 rcdk_3.6.0 scales_1.1.1
[49] ncdf4_1.19 cli_3.2.0 impute_1.68.0 affyio_1.64.0 doParallel_1.0.17 limma_3.50.1
[55] logger_0.2.2 ellipsis_0.3.2 generics_0.1.2 vctrs_0.3.8 rjson_0.2.21 iterators_1.0.14
[61] tools_4.1.2 Biobase_2.54.0 MSnbase_2.20.4 glue_1.6.1 purrr_0.3.4 rcdklibs_2.3
[67] yaml_2.3.5 parallel_4.1.2 clue_0.3-60 colorspace_2.0-3 cluster_2.1.2 BiocManager_1.30.16
[73] vsn_3.62.0 MALDIquant_1.21 rJava_1.0-6