getCompTox() not working anymore because EPA services were retired

MassBank / RMassBank

Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html

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Closed sneumann closed 2 years ago

sneumann commented 2 years ago

Hi, when running getCompTox("GWHJZXXIDMPWGX-UHFFFAOYSA-N") I currently get an error

Error in fromJSON(data) : 
  not all data was parsed (0 chars were parsed out of a total of 9093 chars)

because https://actorws.epa.gov/index.html?identifier=GWHJZXXIDMPWGX-UHFFFAOYSA-N tells us: ACToR and AcTORWS web services have been retired and are being replaced in the near future with new versions.

Yours, Steffen

schymane commented 2 years ago

I guess that we should just deprecate this, since there is no concrete definition of near future at this stage.

tsufz commented 2 years ago

I agree with @schymane to deprecate. This message is life for several weeks (months?) now.

meowcat commented 2 years ago

Fixed on Bioc release and dev, thanks a lot