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MassBank / RMassBank

Playground for experiments on the official http://bioconductor.org/packages/devel/bioc/html/RMassBank.html
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Build error (2023-09-05) #353

Closed sneumann closed 1 year ago

sneumann commented 1 year ago

Hi, we have currently two build errors on all architectures https://bioconductor.org/checkResults/3.17/bioc-LATEST/RMassBank/ https://bioconductor.org/checkResults/3.18/bioc-LATEST/RMassBank/

in the vignette https://github.com/MassBank/RMassBank/blob/3b61006a1a4bac9c94e780ad82834a1dae9ce417/vignettes/RMassBank.Rmd#L433

INFO [2023-09-04 18:16:14] mbWorkflow: Step 1. Gather info from several databases
Quitting from lines 433-434 [unnamed-chunk-22] (RMassBank.Rmd)
Error: processing vignette 'RMassBank.Rmd' failed with diagnostics:
not all data was parsed (0 chars were parsed out of a total of 573 chars)
--- failed re-building ‘RMassBank.Rmd’

If this persists, we'll need to investigate which service fails. Yours, Steffen

sneumann commented 1 year ago

http://cts.fiehnlab.ucdavis.edu/ has a Docker Flow Proxy: 503 Service Unavailable.

Diego fixed things, this should resolve itself soon. Locally the vignette proceeds.

Yours, Steffen