the default PhysiCell output misses information to generate evolutionary lineage trees.
it would be good enough when each agent saves information about:
parent agent_id
simulation time of birth
simulation time of death
with this information, things like generation number or generation time can be derived downstream (in Python, R, Julia or whatever your favorite data analysis language flavor).
the default PhysiCell output misses information to generate evolutionary lineage trees. it would be good enough when each agent saves information about:
with this information, things like generation number or generation time can be derived downstream (in Python, R, Julia or whatever your favorite data analysis language flavor).