MathCancer / PhysiCell

PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
http://PhysiCell.org
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Improvement: lineage tree information in default output #221

Open elmbeech opened 7 months ago

elmbeech commented 7 months ago

the default PhysiCell output misses information to generate evolutionary lineage trees. it would be good enough when each agent saves information about:

with this information, things like generation number or generation time can be derived downstream (in Python, R, Julia or whatever your favorite data analysis language flavor).

elmbeech commented 7 months ago

physicell publications with lineage trees: