Should I get the HLAtype with tumor bam or normal bam？

MathOnco / NeoPredPipe

Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

GNU Lesser General Public License v3.0

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Should I get the HLAtype with tumor bam or normal bam？ #14

Closed Tiredbird closed 5 years ago

Tiredbird commented 5 years ago

Hi all

I prepared the hlatype for the NoePredPipe. I tried tumor bam and normal bam. Usually, I can get the same result. I want to know which one was right to get the HLAtype.

Thank you!

rschenck commented 5 years ago

Please use a normal bam.