"--manualproc" issuse: Small deletions called by Strelka were ignored because of a format issue and annovar put them in the invalid_input file. Annovar requires deletions to have a different start and end value, where end-start is the length of the deletion. Small insertions and SNVs are fine.
"--manualproc" issuse: Small deletions called by Strelka were ignored because of a format issue and annovar put them in the invalid_input file. Annovar requires deletions to have a different start and end value, where end-start is the length of the deletion. Small insertions and SNVs are fine.