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MathOnco / NeoPredPipe

Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
GNU Lesser General Public License v3.0
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python TabError problem #24

Closed Xiaohuaniu0032 closed 3 years ago

Xiaohuaniu0032 commented 3 years ago

Hi, i am testing the NeoPredPipe, and get the following problem:

$ python ./NeoPredPipe.py -h
Traceback (most recent call last):
  File "./NeoPredPipe.py", line 18, in <module>
    from vcf_manipulate import convert_to_annovar, annovar_annotation, get_coding_change,\
  File "/data1/workdir/fulongfei/git_repo/NeoPredPipe/vcf_manipulate.py", line 39
    vcf_file_chr = linespl[0]
                            ^
TabError: inconsistent use of tabs and spaces in indentation

I have fixed this problem, and here i open this issue just want to report this small bugs to you. thanks.

elakatos commented 3 years ago

Thank you for reporting this! Just out of curiosity, can you let me know the specifics of your python version and environment (e.g. OS) when running into this?