cdgatenbee
commented
3 weeks ago Hi @lingxitong, So sorry for not responding earlier, I seem to have missed this issue :( Where you able to figure out why the last image wasn't working? If not, you can share the images using my e-mail, Chandler[dot]Gatenbee[at]moffitt[dot]org. Best, -Chandler
Hello， I have 53 pairs of D2-40 and HE svs WSI, I successfully registered 52 pairs，But the last one always has problem and do not have any print-info ,this is my code:
def registraration_onepair_slide(slide_src_dir,reference_slide,results_dst_dir,save_registered_slide_dst_dir): registrar = registration.Valis(slide_src_dir, results_dst_dir,reference_img_f=reference_slide,align_to_reference=True) rigid_registrar, non_rigid_registrar, error_df = registrar.register() registrar.register_micro(max_non_rigid_registration_dim_px=2000, align_to_reference=True) base_name = os.path.basename(slide_src_dir) registrar.warp_and_save_slides(save_registered_slide_dst_dir, crop=True,compression='jpeg',Q=20)
Can you give me a email, I will send my D2-40 and HE svs, Can you help solve this probelm, thanks very much!