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MathOnco
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valis
Virtual Alignment of pathoLogy Image Series
https://valis.readthedocs.io/en/latest/
MIT License
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adding sched_getaffinity when available to determine number of procs
#115
p-smirnov
closed
4 months ago
1
Enhancement: respecting cgroup cpu limits
#114
p-smirnov
closed
4 months ago
1
check_flattened_pyramid_tiff question
#113
p-smirnov
opened
7 months ago
3
Installation/import problem -- 'xfeatures2d module is not available'
#112
stevenjayfrank
opened
7 months ago
7
TypeError:'NoneType' object is not subscriptable
#110
syy-create
closed
6 months ago
15
slide level save
#109
lingxitong
opened
7 months ago
2
Why the inverse matrix in warp_tools.warp_xy_rigid?
#108
lifangda01
closed
8 months ago
1
That is the difference between "towards" and "directly to"?
#107
ciaobladoo
closed
8 months ago
5
Which registered version is saved?
#106
ciaobladoo
opened
8 months ago
7
Issues with large image stack alignment
#105
pgensbigler
opened
8 months ago
2
Key Error encountered during Rigid Registration
#104
ciaobladoo
opened
9 months ago
2
Radians instead of degrees in np.sin() and np.cos()?
#103
lifangda01
closed
9 months ago
2
ValueError: cannot convert float NaN to integer
#102
ciaobladoo
closed
9 months ago
3
File size and channel names
#101
smith6jt-cop
opened
9 months ago
10
UnboundLocalError: local variable 'slide_obj' referenced before assignment
#100
ciaobladoo
closed
9 months ago
4
list index out of range
#96
dr-sayyadhury
opened
9 months ago
5
Fixed error estimate in reflection detection in serial_rigid.py
#95
lifangda01
closed
9 months ago
1
ValueError: array to be byte-swapped is read-only
#94
smith6jt-cop
closed
9 months ago
5
UnboundLocalError: local variable 'slide_dimensions' referenced before assignment
#93
melanieloth
opened
10 months ago
2
Encountering difficulties installing valis-wsi due to compatibility issues with Python 3.12.
#92
jeginderof
opened
10 months ago
2
Channels merged during merging registered CyCIF images
#91
Ajaingithub
closed
10 months ago
1
Issue saving the ome.tiff while merging 2channel tiffs.
#90
andreevg04
opened
10 months ago
13
list index out of range error when trying to save registered slides
#89
ciaobladoo
closed
9 months ago
12
Saving as SVS file?
#88
ciaobladoo
closed
10 months ago
2
valis == 1.0.2 error
#87
464hee
closed
10 months ago
0
registrar.warp_and_save_slides function not producing output
#86
melanieloth
opened
11 months ago
10
acrobat_2023 registration
#85
aliuak
opened
12 months ago
1
UnboundLocalError: local variable 'reader' referenced before assignment
#84
daviddaiweizhang
opened
1 year ago
16
Tiff Write Error
#82
Justin-Krieg
opened
1 year ago
0
Works with Lif file Or Tiff files as a source ?
#81
Nal44
opened
1 year ago
38
TurboJPEG error?
#80
billnjcn111
closed
11 months ago
12
non-rigid registration
#79
cristinaperez9
closed
1 year ago
1
KeyError: 'None' error while using warp_and_save_slide to save ome.tiff
#78
arundasan91
opened
1 year ago
14
Apply registration to new image does not work using the warp_slide function.
#77
linchundan88
closed
1 year ago
1
'NoneType' object has no attribute 'shape'
#76
Justin-Krieg
opened
1 year ago
19
Annotations transferred with VALIS cannot be modified (despite being unlocked)
#75
marco1108
closed
1 year ago
0
UnboundLocalError: local variable 'reader' referenced before assignment
#74
WXY-Belief
closed
1 year ago
2
after registration, parameters for rigid registration
#73
WXY-Belief
closed
1 year ago
3
Increased epsilon value in norm_img_stats
#72
NichD
closed
1 year ago
0
Non-monotonically increasing image values cause error in normalization
#71
NichD
closed
1 year ago
2
Rigid registration attempts impossible warps
#70
dnschouten
opened
1 year ago
1
Update ACROBAT README.rst
#69
cdgatenbee
closed
1 year ago
0
rigid registration not working
#68
matthiaskoenig
closed
1 year ago
2
extract_area: bad extract area Error
#67
matthiaskoenig
opened
1 year ago
7
Fix docker link
#66
matthiaskoenig
closed
1 year ago
0
Error in local Docker build
#65
dnschouten
closed
1 year ago
1
xmlschema.exceptions error on Windows WSL only
#64
Raoufsk
closed
1 year ago
3
Applying tranformations from the registrar to other slides.
#63
Gibbsdavidl
closed
1 year ago
3
Problem: Reading the high-resolution layers of the pyramid image for registration at a lower resolution level.
#60
juanenofbit
opened
1 year ago
16
Registering Slide to Standard Space
#59
abadgerw
opened
1 year ago
23
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