Closed Mathelab closed 8 years ago
Shouldn't this say 3.2.0? I tested the installation on Andy's computer using the github readme and it fails on R 3.2.0. The bioconductor packages install but when the line devtools::install_github("mathelab/ALTRE") is run and it is automatically installing the other R packages it fails on the installation of the readr R package.
Got it to work but had to do lots of manual installations:
need to install gfortran version-4.2 first
install.packages("devtools")
source("http://bioconductor.org/biocLite.R")
install.packages(“sourcetools”)
install.packages(“Matrix”)
install.packages(“shiny”)
install.packages(“rmarkdown”)
install.packages(“shinydashboard”)
install.packages(“shinyFiles”)
biocLite(“AnnotationHub”)
biocLite(“rGREAT”)
BiocInstaller::biocLite(c(
'org.Hs.eg.db',
'EnsDb.Hsapiens.v75',
‘GO.db’,
‘dplyr',
‘ensembldb’,
‘genefilter’,
‘DESeq2’))
install.packages(“highcharter”)
install.packages(“readr”)
devtools::install_github("mathelab/ALTRE", ref="webgraphs")
Test package on 3.3.2 and ensure it works.