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Mathelab / ALTRE

ALTered Regulatory Elements
http://mathelab.github.io/ALTRE/
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runGreat function error #28

Closed rfarouni closed 8 years ago

rfarouni commented 8 years ago

This for loop will fail

 for (i in c("Experiment Specific", "Reference Specific", "Shared")) {
    print(paste("Running", i))
    mypeaks <- as.data.frame(peaks$analysisresults)[
      which(table(peaks$analysisresults$REaltrecateg) == i),
      c("chr", "start", "stop")]

since

peaks$analysisresults$REaltrecateg

contains four categories

  1. A549SpecificByIntensity
  2. Ambiguous
  3. SAECSpecificByIntensity
  4. Shared
Mathelab commented 8 years ago

Fixed