Hello,
I was trying to use ALTRE to perform some differential accessibility analysis on my mouse ATAC-seq data and ran into problems while following the vignette. Although I have loaded and read in my peak/bed files successfully, I'm faced with an error message stating that: "Peaks must be a GRangesList Object" even though running samplePeaks shows that the peaks are GRangesList Objects. Any help you could provide would be much appreciated!
Hello, I was trying to use ALTRE to perform some differential accessibility analysis on my mouse ATAC-seq data and ran into problems while following the vignette. Although I have loaded and read in my peak/bed files successfully, I'm faced with an error message stating that: "Peaks must be a GRangesList Object" even though running samplePeaks shows that the peaks are GRangesList Objects. Any help you could provide would be much appreciated!