search

Mathelab / ALTRE

ALTered Regulatory Elements
http://mathelab.github.io/ALTRE/
9 stars 8 forks source link

Error Reading in Peaks #55

Open oeg5qc opened 3 years ago

oeg5qc commented 3 years ago

Hello, I was trying to use ALTRE to perform some differential accessibility analysis on my mouse ATAC-seq data and ran into problems while following the vignette. Although I have loaded and read in my peak/bed files successfully, I'm faced with an error message stating that: "Peaks must be a GRangesList Object" even though running samplePeaks shows that the peaks are GRangesList Objects. Any help you could provide would be much appreciated!

image

Robert-Paxton commented 3 years ago

Hello,

I just want to chime in and say that I'm having the same issue as oeg5qc, even with the test data. If you have any suggestions it would be fantastic!

Screen Shot 2021-07-16 at 5 24 29 PM Screen Shot 2021-07-16 at 5 24 41 PM