MathiasRenaud / BIOL499

Senior Honours Thesis Project
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Extend methods for more species (fly, worm, yeast) #2

Open MathiasRenaud opened 5 years ago

MathiasRenaud commented 5 years ago

The limiting factor for species is GREAT, which is only available for human, mouse (2 assemblies) and zebrafish.

Using the Enrichr R package works (was tested for zebrafish) but needs to be worked on. This would allow support for fly (D. melanogaster), worm (C. elegans), and yeast (S. cerevisiae). Enrichr also supports human, mouse and zebrafish but it doesn't provide a benefit over GREAT since it is a gene-based approach.