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Mathilde-16 / STOP_MS_data

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Using PMJ instead of vertebral level #21

Closed jcohenadad closed 3 months ago

jcohenadad commented 3 months ago

Given the difficulty to perform reliable vertebral labeling https://github.com/Mathilde-16/STOP_MS_data/issues/6, we could consider detecting the pontomedullary junction and then measuring CSA based on the distance from the PMJ, as suggested in https://www.frontiersin.org/journals/neuroimaging/articles/10.3389/fnimg.2022.1031253/full

Fixes #20

jcohenadad commented 3 months ago

Results are promising in these 11 subjects, with the PMJ being detected automatically with success: qc.zip

Output CSA: csa-SC_T1w.csv